mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-25 03:58:17 +00:00
c5235a983d
* Add blacklist of modules that shouldn't be updated to .nf-core.yml * nf-core modules bump-versions for all modules * Remove TODO statements identified by linting * Fix md5sums for failing tests * Fix more tests
23 lines
1.1 KiB
YAML
23 lines
1.1 KiB
YAML
- name: gubbins
|
|
command: nextflow run ./tests/modules/gubbins -entry test_gubbins -c tests/config/nextflow.config
|
|
tags:
|
|
- gubbins
|
|
files:
|
|
- path: output/gubbins/all_sites.filtered_polymorphic_sites.fasta
|
|
md5sum: 4cbfd93868d8ed7d4d8b099eba137134
|
|
- path: output/gubbins/all_sites.recombination_predictions.embl
|
|
md5sum: d41d8cd98f00b204e9800998ecf8427e
|
|
- path: output/gubbins/all_sites.recombination_predictions.gff
|
|
md5sum: f95871e79968340cb82532e2c9b0c92b
|
|
- path: output/gubbins/all_sites.branch_base_reconstruction.embl
|
|
md5sum: 9e051646d630f528fff58f1f73286006
|
|
- path: output/gubbins/all_sites.summary_of_snp_distribution.vcf
|
|
md5sum: 276e62e888ea811577c8ffb2da0b3aff
|
|
- path: output/gubbins/all_sites.per_branch_statistics.csv
|
|
md5sum: 25e4fdb6681c3709a9add1d5632bbf3e
|
|
- path: output/gubbins/all_sites.filtered_polymorphic_sites.phylip
|
|
md5sum: 0a77f397a7797c5c3386832745b0c97a
|
|
- path: output/gubbins/all_sites.final_tree.tre
|
|
md5sum: 6cb251b58307aab11cb4b48792d6cda1
|
|
- path: output/gubbins/all_sites.node_labelled.final_tree.tre
|
|
md5sum: e01f965a15924b4f97603b8011c8d3f7
|