mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-25 03:58:17 +00:00
e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
16 lines
560 B
Text
16 lines
560 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { MOSDEPTH } from '../../../modules/mosdepth/main.nf' addParams( options: [:] )
|
|
|
|
workflow test_mosdepth {
|
|
input = [ [ id:'test', single_end:true ],
|
|
[ file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true) ],
|
|
[ file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam_bai'], checkIfExists: true) ]
|
|
]
|
|
dummy = file("dummy_file.txt")
|
|
window = 100
|
|
|
|
MOSDEPTH ( input, dummy, window )
|
|
}
|