mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-25 03:58:17 +00:00
e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
27 lines
758 B
Text
27 lines
758 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { PRESEQ_LCEXTRAP } from '../../../../modules/preseq/lcextrap/main.nf' addParams( options: [:] )
|
|
|
|
//
|
|
// Test with single-end data
|
|
//
|
|
workflow test_preseq_single_end {
|
|
input = [ [ id:'test', single_end:true ], // meta map
|
|
[ file('https://github.com/smithlabcode/preseq/raw/master/data/SRR1003759_5M_subset.mr', checkIfExists: true) ]
|
|
]
|
|
PRESEQ_LCEXTRAP ( input )
|
|
}
|
|
|
|
//
|
|
// Test with paired-end data
|
|
//
|
|
workflow test_preseq_paired_end {
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
|
[ file('https://github.com/smithlabcode/preseq/raw/master/data/SRR1003759_5M_subset.mr', checkIfExists: true) ]
|
|
]
|
|
|
|
PRESEQ_LCEXTRAP ( input )
|
|
}
|
|
|