mirror of
https://github.com/MillironX/nf-core_modules.git
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1765225042
* feat: view is now in args2 so we can use sort * forgot one split_cpus * feat: update with new logic * fix: add more info * fix: remove split_cpus logic
71 lines
2.7 KiB
YAML
71 lines
2.7 KiB
YAML
- name: bwa mem single-end
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command: nextflow run ./tests/modules/bwa/mem -entry test_bwa_mem_single_end -c ./tests/config/nextflow.config -c ./tests/modules/bwa/mem/nextflow.config
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tags:
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- bwa
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- bwa/mem
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files:
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- path: ./output/bwa/test.bam
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- path: ./output/bwa/bwa/genome.bwt
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md5sum: 0469c30a1e239dd08f68afe66fde99da
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- path: ./output/bwa/bwa/genome.amb
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md5sum: 3a68b8b2287e07dd3f5f95f4344ba76e
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- path: ./output/bwa/bwa/genome.ann
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md5sum: c32e11f6c859f166c7525a9c1d583567
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- path: ./output/bwa/bwa/genome.pac
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md5sum: 983e3d2cd6f36e2546e6d25a0da78d66
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- path: ./output/bwa/bwa/genome.sa
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md5sum: ab3952cabf026b48cd3eb5bccbb636d1
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- name: bwa mem single-end sort
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command: nextflow run ./tests/modules/bwa/mem -entry test_bwa_mem_single_end_sort -c ./tests/config/nextflow.config -c ./tests/modules/bwa/mem/nextflow.config
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tags:
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- bwa
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- bwa/mem
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files:
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- path: ./output/bwa/test.bam
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- path: ./output/bwa/bwa/genome.bwt
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md5sum: 0469c30a1e239dd08f68afe66fde99da
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- path: ./output/bwa/bwa/genome.amb
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md5sum: 3a68b8b2287e07dd3f5f95f4344ba76e
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- path: ./output/bwa/bwa/genome.ann
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md5sum: c32e11f6c859f166c7525a9c1d583567
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- path: ./output/bwa/bwa/genome.pac
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md5sum: 983e3d2cd6f36e2546e6d25a0da78d66
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- path: ./output/bwa/bwa/genome.sa
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md5sum: ab3952cabf026b48cd3eb5bccbb636d1
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- name: bwa mem paired-end
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command: nextflow run ./tests/modules/bwa/mem -entry test_bwa_mem_paired_end -c ./tests/config/nextflow.config -c ./tests/modules/bwa/mem/nextflow.config
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tags:
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- bwa
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- bwa/mem
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files:
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- path: ./output/bwa/test.bam
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- path: ./output/bwa/bwa/genome.bwt
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md5sum: 0469c30a1e239dd08f68afe66fde99da
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- path: ./output/bwa/bwa/genome.amb
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md5sum: 3a68b8b2287e07dd3f5f95f4344ba76e
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- path: ./output/bwa/bwa/genome.ann
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md5sum: c32e11f6c859f166c7525a9c1d583567
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- path: ./output/bwa/bwa/genome.pac
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md5sum: 983e3d2cd6f36e2546e6d25a0da78d66
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- path: ./output/bwa/bwa/genome.sa
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md5sum: ab3952cabf026b48cd3eb5bccbb636d1
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- name: bwa mem paired-end sort
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command: nextflow run ./tests/modules/bwa/mem -entry test_bwa_mem_paired_end_sort -c ./tests/config/nextflow.config -c ./tests/modules/bwa/mem/nextflow.config
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tags:
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- bwa
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- bwa/mem
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files:
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- path: ./output/bwa/test.bam
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- path: ./output/bwa/bwa/genome.bwt
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md5sum: 0469c30a1e239dd08f68afe66fde99da
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- path: ./output/bwa/bwa/genome.amb
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md5sum: 3a68b8b2287e07dd3f5f95f4344ba76e
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- path: ./output/bwa/bwa/genome.ann
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md5sum: c32e11f6c859f166c7525a9c1d583567
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- path: ./output/bwa/bwa/genome.pac
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md5sum: 983e3d2cd6f36e2546e6d25a0da78d66
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- path: ./output/bwa/bwa/genome.sa
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md5sum: ab3952cabf026b48cd3eb5bccbb636d1
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