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2dba72dd14
* Update test for trimgalore * Fix picard markduplicate test * Fix tests for picard mergesamfiles * Fix checksum for markduplicates * Fix multiplemetrics and wgsmetrics * Fix checksum for mergesamfiles
28 lines
808 B
Text
28 lines
808 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { TRIMGALORE } from '../../../software/trimgalore/main.nf' addParams( options: [:] )
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/*
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* Test with single-end data
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*/
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workflow test_trimgalore_single_end {
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input = [ [ id:'test', single_end:true ], // meta map
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[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true) ]
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]
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TRIMGALORE ( input )
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}
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/*
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* Test with paired-end data
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*/
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workflow test_trimgalore_paired_end {
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input = [ [ id:'test', single_end:false ], // meta map
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[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true) ]
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]
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TRIMGALORE ( input )
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}
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