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https://github.com/MillironX/nf-core_modules.git
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a3684d9594
* ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
30 lines
1.1 KiB
YAML
30 lines
1.1 KiB
YAML
- name: ivar variants no gff no mpileup
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command: nextflow run ./tests/software/ivar/variants -entry test_ivar_variants_no_gff_no_mpileup -c tests/config/nextflow.config
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tags:
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- ivar
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- ivar/variants
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files:
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- path: output/ivar/test.tsv
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md5sum: 728f1430f2402861396d9953465ac706
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- name: ivar variants no gff with mpileup
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command: nextflow run ./tests/software/ivar/variants -entry test_ivar_variants_no_gff_with_mpileup -c tests/config/nextflow.config --save_mpileup
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tags:
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- ivar
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- ivar/variants
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files:
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- path: output/ivar/test.tsv
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md5sum: 728f1430f2402861396d9953465ac706
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- path: output/ivar/test.mpileup
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md5sum: 56c4cd5a4ecb7d6364878818f46ae256
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- name: ivar variants with gff with mpileup
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command: nextflow run ./tests/software/ivar/variants -entry test_ivar_variants_with_gff_with_mpileup -c tests/config/nextflow.config --gff tests/data/gff/sarscov2/MN908947.3.gff3 --save_mpileup
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tags:
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- ivar
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- ivar/variants
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files:
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- path: output/ivar/test.tsv
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md5sum: 7b59146132a60da58444bebffc3c2577
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- path: output/ivar/test.mpileup
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md5sum: 56c4cd5a4ecb7d6364878818f46ae256
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