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c9256616b9
* update tests for new config * fix quast, update more * more updates! * more tests updated * fix tests, added tabix gff3.gz * Delete main.nf Removing SPAdes from PR to avoid merge conflicts with https://github.com/nf-core/modules/pull/396 Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
16 lines
561 B
Text
16 lines
561 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { MOSDEPTH } from '../../../software/mosdepth/main.nf' addParams( options: [:] )
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workflow test_mosdepth {
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input = [ [ id:'test', single_end:true ],
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[ file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true) ],
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[ file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam_bai'], checkIfExists: true) ]
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]
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dummy = file("dummy_file.txt")
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window = 100
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MOSDEPTH ( input, dummy, window )
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}
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