nf-core_modules/tests/software/samtools/index/main.nf
arontommi d162f21ab3
Update samtools modules with config logic (#381)
* fixing paths for test

* fixing paths for test

* fixing pats to tests

* fixing paths to tests

* fixing paths to tests

* fixing paths for tests

* fixing paths for tests

* fixing paths for tests

* fixing paths fro tests

* fixing paths for tests

* indentation fixes

* typo

* renaming test results according to new file name

* replacing the md5sums

* fixing brackets

* replacing md5sums

* fixing md5sums

* fixing md5sums'

* Update test.yml

* Update test.yml

* Update test.yml

* Update test.yml

* Update test.yml

* Update test.yml

* Update test.yml

* Update test.yml

Co-authored-by: Ramon Rivera <ramon.rivera10@upr.edu>
Co-authored-by: Ramon Rivera <riveravicens@gmail.com>
2021-03-24 18:15:30 +00:00

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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { SAMTOOLS_INDEX } from '../../../../software/samtools/index/main.nf' addParams( options: [:] )
workflow test_samtools_index {
input = [ [ id:'test', single_end:false ], // meta map
file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true)
]
SAMTOOLS_INDEX ( input )
}