nf-core_modules/tests/modules/roary/test.yml
2022-03-19 15:06:21 +00:00

39 lines
1.9 KiB
YAML

- name: roary test_roary
command: nextflow run ./tests/modules/roary -entry test_roary -c ./tests/config/nextflow.config -c ./tests/modules/roary/nextflow.config
tags:
- roary
files:
- path: output/roary/results/accessory.header.embl
contains: ["ID Genome standard; DNA; PRO; 1234 BP."]
- path: output/roary/results/accessory.tab
contains: ["FT"]
- path: output/roary/results/accessory_binary_genes.fa
md5sum: d4191cf748dd8016ad877857a034bef3
- path: output/roary/results/accessory_binary_genes.fa.newick
md5sum: d4a2a64e781263ca1b9b3a4bc9d3a6ea
- path: output/roary/results/accessory_graph.dot
contains: ["/* list of nodes */"]
- path: output/roary/results/blast_identity_frequency.Rtab
md5sum: 829baa25c3fad94b1af207265452a692
- path: output/roary/results/clustered_proteins
contains: ["JKHLNHAL_00087"]
- path: output/roary/results/core_accessory.header.embl
contains: ["ID Genome standard; DNA; PRO; 1234 BP."]
- path: output/roary/results/core_accessory.tab
contains: ['FT /taxa="test1 test2 test3"']
- path: output/roary/results/core_accessory_graph.dot
contains: ["/* list of nodes */"]
- path: output/roary/results/gene_presence_absence.Rtab
contains: ["Gene"]
- path: output/roary/results/gene_presence_absence.csv
contains: ['"Gene","Non-unique Gene name","Annotation","No. isolates","No. sequences"']
- path: output/roary/results/number_of_conserved_genes.Rtab
contains: ["2"]
- path: output/roary/results/number_of_genes_in_pan_genome.Rtab
contains: ["2"]
- path: output/roary/results/number_of_new_genes.Rtab
contains: ["2"]
- path: output/roary/results/number_of_unique_genes.Rtab
contains: ["2"]
- path: output/roary/results/summary_statistics.txt
md5sum: 3921b5445df6a7ed59408119b8860a58