mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-10 20:23:10 +00:00
f5d5926516
* Match target bed to input files * Intervals in getpileupsumamries * more interval updates * change targets in strelka * remove leftover channel * fix checksums * add new test vcfs * add new test vcfs * Update modules/freebayes/main.nf Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
21 lines
1,005 B
YAML
21 lines
1,005 B
YAML
- name: strelka somatic test_strelka_somatic
|
|
command: nextflow run ./tests/modules/strelka/somatic -entry test_strelka_somatic -c ./tests/config/nextflow.config -c ./tests/modules/strelka/somatic/nextflow.config
|
|
tags:
|
|
- strelka
|
|
- strelka/somatic
|
|
files:
|
|
- path: output/strelka/test.somatic_indels.vcf.gz
|
|
- path: output/strelka/test.somatic_indels.vcf.gz.tbi
|
|
- path: output/strelka/test.somatic_snvs.vcf.gz
|
|
- path: output/strelka/test.somatic_snvs.vcf.gz.tbi
|
|
|
|
- name: strelka somatic test_strelka_best_practices_somatic
|
|
command: nextflow run ./tests/modules/strelka/somatic -entry test_strelka_best_practices_somatic -c ./tests/config/nextflow.config -c ./tests/modules/strelka/somatic/nextflow.config
|
|
tags:
|
|
- strelka
|
|
- strelka/somatic
|
|
files:
|
|
- path: output/strelka/test.somatic_indels.vcf.gz
|
|
- path: output/strelka/test.somatic_indels.vcf.gz.tbi
|
|
- path: output/strelka/test.somatic_snvs.vcf.gz
|
|
- path: output/strelka/test.somatic_snvs.vcf.gz.tbi
|