mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 03:28:17 +00:00
8d4373b4e8
* added bcftools convert * Update modules/bcftools/convert/main.nf Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com> * updated test.yml * Update modules/bcftools/convert/main.nf Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com> * added automatic output type detection * linting * removed a trailing whitespace Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
23 lines
996 B
YAML
23 lines
996 B
YAML
- name: bcftools convert test_bcftools_convert_gvcf
|
|
command: nextflow run ./tests/modules/bcftools/convert -entry test_bcftools_convert_gvcf -c ./tests/config/nextflow.config -c ./tests/modules/bcftools/convert/nextflow.config
|
|
tags:
|
|
- bcftools/convert
|
|
- bcftools
|
|
files:
|
|
- path: output/bcftools/test.vcf.gz
|
|
|
|
- name: bcftools convert test_bcftools_convert_gvcf_bed
|
|
command: nextflow run ./tests/modules/bcftools/convert -entry test_bcftools_convert_gvcf_bed -c ./tests/config/nextflow.config -c ./tests/modules/bcftools/convert/nextflow.config
|
|
tags:
|
|
- bcftools/convert
|
|
- bcftools
|
|
files:
|
|
- path: output/bcftools/test.vcf.gz
|
|
|
|
- name: bcftools convert test_bcftools_convert_gvcf_to_bcf
|
|
command: nextflow run ./tests/modules/bcftools/convert -entry test_bcftools_convert_gvcf_to_bcf -c ./tests/config/nextflow.config -c ./tests/modules/bcftools/convert/nextflow.config
|
|
tags:
|
|
- bcftools/convert
|
|
- bcftools
|
|
files:
|
|
- path: output/bcftools/test.bcf.gz
|