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https://github.com/MillironX/nf-core_modules.git
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94619a3faf
* add annotate * add models * add compound * add score * update annotate recipe * update meta and main * main updates * add test for annotate * update all tests * refactor * update tests * fix conda issue * review suggestions
40 lines
1 KiB
YAML
40 lines
1 KiB
YAML
name: "genmod_annotate"
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description: for annotating regions, frequencies, cadd scores
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keywords:
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- annotate
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- genmod
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tools:
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- "genmod":
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description: "Annotate genetic inheritance models in variant files"
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homepage: "https://github.com/Clinical-Genomics/genmod"
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documentation: "https://github.com/Clinical-Genomics/genmod"
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tool_dev_url: "https://github.com/moonso"
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doi: ""
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licence: "['MIT']"
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- input_vcf:
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type: file
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description: VCF file
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pattern: "*.{vcf}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- vcf:
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type: vcf
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description: Annotated VCF file
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pattern: "*.{vcf}"
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authors:
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- "@ramprasadn"
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