nf-core_modules/software/gatk/createsequencedictionary/meta.yml

51 lines
1.8 KiB
YAML

name: gatk_createsequencedictionary
description: Creates a sequence dictionary for a reference sequence
keywords:
- dictionary
- fasta
tools:
- gatk:
description: |
Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools
with a primary focus on variant discovery and genotyping. Its powerful processing engine
and high-performance computing features make it capable of taking on projects of any size.
homepage: https://gatk.broadinstitute.org/hc/en-us
documentation: https://gatk.broadinstitute.org/hc/en-us/categories/360002369672s
doi: 10.1158/1538-7445.AM2017-3590
params:
- outdir:
type: string
description: |
The pipeline's output directory. By default, the module will
output files into `$params.outdir/<SOFTWARE>`
- publish_dir_mode:
type: string
description: |
Value for the Nextflow `publishDir` mode parameter.
Available: symlink, rellink, link, copy, copyNoFollow, move.
- enable_conda:
type: boolean
description: |
Run the module with Conda using the software specified
via the `conda` directive
- singularity_pull_docker_container:
type: boolean
description: |
Instead of directly downloading Singularity images for use with Singularity,
force the workflow to pull and convert Docker containers instead.
input:
- fasta:
type: file
description: Input fasta file
pattern: "*.{fasta,fa}"
output:
- bam:
type: file
description: gatk dictionary file
pattern: "*.{dict}"
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
authors:
- "@maxulysse"