GCJMackenzie 316aedaaa6 bug fixes: genomicsdbimport (#1035) ... * saving changes to checkout * saving to sort out other branch * removed yml tracking of files that cant be tracked due to directory name changing between runs * test data added, ready for pr * fix eol linting error * Update modules/gatk4/genomicsdbimport/main.nf Co-authored-by: Francesco L <53608000+lescai@users.noreply.github.com> * merging with master * update push to show progress * tests now working untar able to pass data to genomicsdbimport * commit to checkout * tests updated, module reworked to simplify and emit updated gendb * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * update meta.yml Priority of input options changed, updated to reflect this * Update test.yml name prefix changed in main script, test.yml updated to reflect this * fix tests due to review changes * bug fixes, multicalling samples and gendb emissions now fixed * Update pytest_modules.yml * Update meta.yml Co-authored-by: GCJMackenzie <gavin.mackenzie@nibsc.org> Co-authored-by: Francesco L <53608000+lescai@users.noreply.github.com> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Gregor Sturm <mail@gregor-sturm.de>		2021-11-06 15:51:15 +00:00
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main.nf	bug fixes: genomicsdbimport (#1035)	2021-11-06 15:51:15 +00:00
test.yml	bug fixes: genomicsdbimport (#1035)	2021-11-06 15:51:15 +00:00