mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
58 lines
1.4 KiB
Text
58 lines
1.4 KiB
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { SEQKIT_STATS } from '../../../../modules/seqkit/stats/main.nf'
|
|
|
|
workflow test_seqkit_stats_single_end {
|
|
|
|
input = [
|
|
[ id:'test', single_end:true ], // meta map
|
|
file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true)
|
|
]
|
|
|
|
SEQKIT_STATS ( input )
|
|
}
|
|
|
|
workflow test_seqkit_stats_paired_end {
|
|
|
|
input = [
|
|
[ id:'test', single_end:false ], // meta map
|
|
[
|
|
file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
|
|
file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true)
|
|
]
|
|
]
|
|
|
|
SEQKIT_STATS ( input )
|
|
}
|
|
|
|
workflow test_seqkit_stats_nanopore {
|
|
|
|
input = [
|
|
[ id:'test', single_end:false ], // meta map
|
|
file(params.test_data['sarscov2']['nanopore']['test_fastq_gz'], checkIfExists: true),
|
|
]
|
|
|
|
SEQKIT_STATS ( input )
|
|
}
|
|
|
|
workflow test_seqkit_stats_genome_fasta {
|
|
|
|
input = [
|
|
[ id:'test', single_end:false ], // meta map
|
|
file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true),
|
|
]
|
|
|
|
SEQKIT_STATS ( input )
|
|
}
|
|
|
|
workflow test_seqkit_stats_transcriptome_fasta {
|
|
|
|
input = [
|
|
[ id:'test', single_end:false ], // meta map
|
|
file(params.test_data['sarscov2']['genome']['transcriptome_fasta'], checkIfExists: true),
|
|
]
|
|
|
|
SEQKIT_STATS ( input )
|
|
}
|