millironx/nf-core_modules
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nf-core_modules/tests/subworkflows/nf-core
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Maxime U. Garcia 31d4099f38
Add subworkflows for ensemblvep and snpeff (#1124) 
* greatly simplify syntax

* feat: add subworkflows to annotate (+ bgzip/tabix index) with ensemblvep and snpeff

* feat: get versions from all tools

* add commented infor for new annotation modules
2021-12-07 17:12:35 +01:00
..
align_bowtie2 Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
annotation_ensemblvep Add subworkflows for ensemblvep and snpeff (#1124) 2021-12-07 17:12:35 +01:00
annotation_snpeff Add subworkflows for ensemblvep and snpeff (#1124) 2021-12-07 17:12:35 +01:00
bam_sort_samtools Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
bam_stats_samtools Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
gatk_create_som_pon Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
gatk_tumor_normal_somatic_variant_calling Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
gatk_tumor_only_somatic_variant_calling Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
sra_fastq Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00