mirror of
https://github.com/MillironX/nf-core_modules.git
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9ae34a01d1
* Fix typo * Add stub runs for testing input without matched normals * Add missing -stub-run * remove empty file checksum tests and change workflow names * test controlfreec naming * fix output file names * fix output file names * fix output file names * fix conda and container path difference for R scripts * update tar version to work with conda * fix version number in docker * try to fix path to script, pretty sure it won't work * try new ways to set path with wildcard * try which * add which but with escape * remove comment
37 lines
1.6 KiB
YAML
37 lines
1.6 KiB
YAML
- name: controlfreec test_controlfreec_freec
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command: nextflow run tests/modules/controlfreec/freec -entry test_controlfreec_freec -c tests/config/nextflow.config
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tags:
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- controlfreec
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- controlfreec/freec
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files:
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- path: output/controlfreec/config.txt
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- path: output/controlfreec/test.mpileup.gz_control.cpn
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md5sum: 1768b571677c418560e5a8fe203bdc79
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- path: output/controlfreec/test2.mpileup.gz_BAF.txt
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md5sum: 3bb7437001cf061a77eaf87b8558c48d
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- path: output/controlfreec/test2.mpileup.gz_CNVs
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md5sum: 1f4f5834dbd1490afdb22f6d3091c4c9
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- path: output/controlfreec/test2.mpileup.gz_info.txt
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md5sum: 1a3055d35028525ccc9e693cc9f335e0
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- path: output/controlfreec/test2.mpileup.gz_ratio.BedGraph
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md5sum: 8ba455b232be20cdcc5bf1e4035e8032
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- path: output/controlfreec/test2.mpileup.gz_ratio.txt
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md5sum: b76b2434de710325069e37fb1e132760
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- path: output/controlfreec/test2.mpileup.gz_sample.cpn
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md5sum: c80dad58a77b1d7ba6d273999f4b4b4b
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- path: output/controlfreec/versions.yml
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- name: controlfreec test_controlfreec_freec_single
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command: nextflow run tests/modules/controlfreec/freec -entry test_controlfreec_freec_single -c tests/config/nextflow.config -stub-run
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tags:
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- controlfreec
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- controlfreec/freec
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files:
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- path: output/controlfreec/config.txt
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- path: output/controlfreec/test2_BAF.txt
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- path: output/controlfreec/test2_CNVs
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- path: output/controlfreec/test2_info.txt
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- path: output/controlfreec/test2_ratio.BedGraph
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- path: output/controlfreec/test2_ratio.txt
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- path: output/controlfreec/test2_sample.cpn
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- path: output/controlfreec/versions.yml
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