nf-core_modules/software/samtools
suzannejin d6850f8312
modified the samtools/fastq module (#339)
* new module: samtools/fastq

* solve conflict: pytest_software.yml

* solve linting conflicts

* solved EditorConfig linting problem

* Module samtools/fastq:
	* output compressed fastq.gz file(s)
	* add if conditionals for single/paired reads

* samtools/fastq: modified test.yml

* samtools/fastq: modified main.nf to avoid duplicated part of the script section

Co-authored-by: suzannejin <suzanne.jin@crg.eu>
2021-03-23 17:43:52 +00:00
..
faidx remove params section from meta.yml (#282) 2021-03-19 13:16:50 +01:00
fastq modified the samtools/fastq module (#339) 2021-03-23 17:43:52 +00:00
flagstat remove params section from meta.yml (#282) 2021-03-19 13:16:50 +01:00
idxstats remove params section from meta.yml (#282) 2021-03-19 13:16:50 +01:00
index remove params section from meta.yml (#282) 2021-03-19 13:16:50 +01:00
merge add samtools merge (#296) 2021-03-22 13:48:23 +01:00
mpileup remove params section from meta.yml (#282) 2021-03-19 13:16:50 +01:00
sort remove params section from meta.yml (#282) 2021-03-19 13:16:50 +01:00
stats remove params section from meta.yml (#282) 2021-03-19 13:16:50 +01:00
view remove params section from meta.yml (#282) 2021-03-19 13:16:50 +01:00