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https://github.com/MillironX/nf-core_modules.git
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f9ce8664ba
* add bismark/align module * bismark/align: add tests * bismark/align: update meta.yml * bismark/align: skip checksum for alignment logs they contain timestamps * bismark/align: restore correct checksum caused some mixup in the last commit * bismark/align: add genome_preparation to filters * Fix conda version pin * change options to be a global var * remove params from meta.yml * add bismark/report * fix test filepaths * remove mysterious index files
19 lines
846 B
YAML
19 lines
846 B
YAML
- name: Run bismark align single-end test workflow
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command: nextflow run ./tests/software/bismark/align -entry test_bismark_align_single_end -c tests/config/nextflow.config
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tags:
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- bismark
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- bismark_align
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files:
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- path: output/test_single_end/test_methylated_1_bismark_bt2.bam
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md5sum: 7f9744cec5aa7908675e5fae79af36fc
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- path: output/test_single_end/test_methylated_1_bismark_bt2_SE_report.txt
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- name: Run bismark align paired-end test workflow
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command: nextflow run ./tests/software/bismark/align -entry test_bismark_align_paired_end -c tests/config/nextflow.config
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tags:
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- bismark
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- bismark_align
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files:
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- path: output/test_paired_end/test_methylated_1_bismark_bt2_pe.bam
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md5sum: b13d0d40dffd336375f80fc94acc295f
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- path: output/test_paired_end/test_methylated_1_bismark_bt2_PE_report.txt
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