mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 02:58:17 +00:00
f080015754
* style: Add prettier config files * build: Add prettier vscode extension * ci: Replace markdownlint and yamllint with prettier * style: Run prettier * style: Use indent of 2 for markdown as well https://github.com/nf-core/tools/pull/1470#issuecomment-1071028358 * style: Fix indent * style: Let editorconfig take over tab widths * style: yaml => yml * ci: Run prettier once Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se> Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se>
42 lines
1.2 KiB
YAML
42 lines
1.2 KiB
YAML
name: mafft
|
|
description: Multiple sequence alignment using MAFFT
|
|
keywords:
|
|
- msa
|
|
- multiple sequence alignment
|
|
tools:
|
|
- mafft:
|
|
description: Multiple alignment program for amino acid or nucleotide sequences based on fast Fourier transform
|
|
homepage: https://mafft.cbrc.jp/alignment/software/
|
|
documentation: https://mafft.cbrc.jp/alignment/software/manual/manual.html
|
|
tool_dev_url: https://mafft.cbrc.jp/alignment/software/source.html
|
|
doi: "10.1093/nar/gkf436"
|
|
licence: ["BSD"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- fasta:
|
|
type: file
|
|
description: FASTA file containing the sequences to align
|
|
pattern: "*.{fa,fasta}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- fas:
|
|
type: file
|
|
description: Aligned sequences in FASTA format
|
|
pattern: "*.{fas}"
|
|
|
|
authors:
|
|
- "@MillironX"
|