mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 02:58:17 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
64 lines
1.5 KiB
YAML
64 lines
1.5 KiB
YAML
name: peddy
|
|
description: Manipulation, validation and exploration of pedigrees
|
|
keywords:
|
|
- pedigrees
|
|
- ped
|
|
- family
|
|
|
|
tools:
|
|
- peddy:
|
|
description: genotype, ped correspondence check, ancestry check, sex check. directly, quickly on VCF
|
|
homepage: https://github.com/brentp/peddy
|
|
documentation: https://peddy.readthedocs.io/en/latest/
|
|
tool_dev_url: https://github.com/brentp/peddy
|
|
doi: "https://doi.org/10.1016/j.ajhg.2017.01.017"
|
|
licence: ["MIT"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- vcf:
|
|
type: file
|
|
description: VCF file
|
|
pattern: "*.{vcf.gz}"
|
|
- ped:
|
|
type: file
|
|
description: PED/FAM file
|
|
pattern: "*.{ped,fam}"
|
|
- vcf_tbi:
|
|
type: file
|
|
description: TBI file
|
|
pattern: "*.{vcf.gz.tbi}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- ped:
|
|
type: file
|
|
description: PED/FAM file
|
|
pattern: "*.peddy.{ped}"
|
|
- html:
|
|
type: file
|
|
description: HTML file
|
|
pattern: "*.{html}"
|
|
- csv:
|
|
type: file
|
|
description: CSV file
|
|
pattern: "*.{csv}"
|
|
- png:
|
|
type: file
|
|
description: PNG file
|
|
pattern: "*.{png}"
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
|
|
authors:
|
|
- "@rannick"
|