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e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
46 lines
1.2 KiB
YAML
46 lines
1.2 KiB
YAML
name: variantbam
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description: Filtering, downsampling and profiling alignments in BAM/CRAM formats
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keywords:
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- filter
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- bam
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- subsample
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- downsample
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- downsample bam
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- subsample bam
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tools:
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- variantbam:
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description: Filtering and profiling of next-generational sequencing data using region-specific rules
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homepage: https://github.com/walaj/VariantBam
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documentation: https://github.com/walaj/VariantBam#table-of-contents
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tool_dev_url: https://github.com/walaj/VariantBam
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doi: 10.1093/bioinformatics/btw111
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licence: ["Apache-2.0"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bam:
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type: file
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description: BAM/CRAM file
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pattern: "*.{bam,cram}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- bam:
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type: file
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description: Filtered or downsampled BAM file
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pattern: "*.{bam}"
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authors:
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- "@bjohnnyd"
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