nf-core_modules/modules/diamond/makedb/main.nf
2022-04-29 21:05:12 +02:00

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process DIAMOND_MAKEDB {
tag "$fasta"
label 'process_medium'
conda (params.enable_conda ? "bioconda::diamond=2.0.15" : null)
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/diamond:2.0.15--hb97b32f_0' :
'quay.io/biocontainers/diamond:2.0.15--hb97b32f_0' }"
input:
path fasta
output:
path "${fasta}.dmnd", emit: db
path "versions.yml" , emit: versions
when:
task.ext.when == null || task.ext.when
script:
def args = task.ext.args ?: ''
"""
diamond \\
makedb \\
--threads $task.cpus \\
--in $fasta \\
-d $fasta \\
$args
cat <<-END_VERSIONS > versions.yml
"${task.process}":
diamond: \$(diamond --version 2>&1 | tail -n 1 | sed 's/^diamond version //')
END_VERSIONS
"""
}