mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
55 lines
1.3 KiB
YAML
55 lines
1.3 KiB
YAML
name: svdb_query
|
|
description: Query a structural variant database, using a vcf file as query
|
|
keywords:
|
|
- structural variants
|
|
tools:
|
|
- svdb:
|
|
description: structural variant database software
|
|
homepage: https://github.com/J35P312/SVDB
|
|
documentation: https://github.com/J35P312/SVDB/blob/master/README.md
|
|
licence: ["MIT"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- in_occs:
|
|
type: list
|
|
description: A list of allele count tags
|
|
- in_frqs:
|
|
type: list
|
|
description: A list of allele frequency tags
|
|
- vcf:
|
|
type: file
|
|
description: query vcf file
|
|
pattern: "*.{vcf,vcf.gz}"
|
|
- vcf_db:
|
|
type: file
|
|
description: database vcf file
|
|
pattern: "*.{vcf,vcf.gz}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test' ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- out_occs:
|
|
type: list
|
|
description: A list of allele count tags
|
|
- out_frqs:
|
|
type: list
|
|
description: A list of allele frequency tags
|
|
- vcf:
|
|
type: file
|
|
description: Annotated output VCF file
|
|
pattern: "*_query.vcf"
|
|
|
|
authors:
|
|
- "@ramprasadn"
|