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ddbca7b467
The user will now set the env variable and pass it to pytest. You also can't set the env variable ahead of time, it has to be run with pytest. Example: PROFILE=conda pytest --tag fastqc --symlink --kwd
15 lines
370 B
Text
15 lines
370 B
Text
params {
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outdir = "output/"
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publish_dir_mode = "copy"
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enable_conda = false
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}
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if("$PROFILE" == "docker") {
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docker.enabled = true
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docker.runOptions = '-u \$(id -u):\$(id -g)'
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} else if ("$PROFILE" == "singularity") {
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singularity.enabled = true
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singularity.autoMounts = true
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} else if ("$PROFILE" == "conda") {
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params.enable_conda = true
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}
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