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a3684d9594
* ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
19 lines
846 B
YAML
19 lines
846 B
YAML
- name: Run bismark align single-end test workflow
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command: nextflow run ./tests/software/bismark/align -entry test_bismark_align_single_end -c tests/config/nextflow.config
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tags:
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- bismark
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- bismark/align
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files:
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- path: output/test_single_end/test_methylated_1_bismark_bt2.bam
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md5sum: 7f9744cec5aa7908675e5fae79af36fc
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- path: output/test_single_end/test_methylated_1_bismark_bt2_SE_report.txt
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- name: Run bismark align paired-end test workflow
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command: nextflow run ./tests/software/bismark/align -entry test_bismark_align_paired_end -c tests/config/nextflow.config
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tags:
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- bismark
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- bismark/align
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files:
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- path: output/test_paired_end/test_methylated_1_bismark_bt2_pe.bam
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md5sum: b13d0d40dffd336375f80fc94acc295f
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- path: output/test_paired_end/test_methylated_1_bismark_bt2_PE_report.txt
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