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https://github.com/MillironX/nf-core_modules.git
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67 lines
2.1 KiB
YAML
67 lines
2.1 KiB
YAML
name: "genomescope2"
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description: Estimate genome heterozygosity, repeat content, and size from sequencing reads using a kmer-based statistical approach
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keywords:
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- "genome size"
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- "genome heterozygosity"
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- "repeat content"
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tools:
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- "genomescope2":
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description: "Reference-free profiling of polyploid genomes"
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homepage: "http://qb.cshl.edu/genomescope/genomescope2.0/"
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documentation: "https://github.com/tbenavi1/genomescope2.0/blob/master/README.md"
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tool_dev_url: "https://github.com/tbenavi1/genomescope2.0"
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doi: "https://doi.org/10.1038/s41467-020-14998-3"
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licence: "['Apache License, Version 2.0 (Apache-2.0)']"
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- histogram:
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type: file
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description: A K-mer histogram file
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pattern: "*.hist"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- linear_plot_png:
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type: file
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description: A genomescope2 linear plot in PNG format
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pattern: "*_linear_plot.png"
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- linear_plot_png:
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type: file
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description: A genomescope2 linear plot in PNG format
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pattern: "*_linear_plot.png"
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- transformed_linear_plot_png:
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type: file
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description: A genomescope2 transformed linear plot in PNG format
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pattern: "*_transformed_linear_plot.png"
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- log_plot_png:
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type: file
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description: A genomescope2 log plot in PNG format
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pattern: "*_log_plot.png"
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- transformed_log_plot_png:
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type: file
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description: A genomescope2 transformed log plot in PNG format
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pattern: "*_transformed_log_plot.png"
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- model:
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type: file
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description: Genomescope2 model fit summary
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pattern: "*_model.txt"
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- summary:
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type: file
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description: Genomescope2 histogram summary
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pattern: "*_summary.txt"
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authors:
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- "@mahesh-panchal"
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