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31 lines
920 B
Text
31 lines
920 B
Text
process LAST_SPLIT {
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tag "$meta.id"
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label 'process_high'
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conda (params.enable_conda ? 'bioconda::last=1250' : null)
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container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
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'https://depot.galaxyproject.org/singularity/last:1250--h2e03b76_0' :
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'quay.io/biocontainers/last:1250--h2e03b76_0' }"
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input:
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tuple val(meta), path(maf)
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output:
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tuple val(meta), path("*.maf.gz"), emit: maf
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path "versions.yml" , emit: versions
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when:
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task.ext.when == null || task.ext.when
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script:
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def args = task.ext.args ?: ''
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def prefix = task.ext.prefix ?: "${meta.id}"
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"""
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zcat < $maf | last-split $args | gzip --no-name > ${prefix}.maf.gz
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cat <<-END_VERSIONS > versions.yml
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"${task.process}":
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last: \$(last-split --version 2>&1 | sed 's/last-split //')
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END_VERSIONS
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"""
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}
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