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https://github.com/MillironX/nf-core_modules.git
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28 lines
1.2 KiB
YAML
28 lines
1.2 KiB
YAML
- name: gatk4 applybqsr test_gatk4_applybqsr_spark
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command: nextflow run tests/modules/gatk4/applybqsrspark -entry test_gatk4_applybqsr_spark -c tests/config/nextflow.config -c ./tests/modules/gatk4/applybqsrspark/nextflow.config
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tags:
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- gatk4
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- gatk4/applybqsrspark
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files:
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- path: output/gatk4/test.bam
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md5sum: 1901c819fcba0fdd5e2482e6dc8285ef
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- path: output/gatk4/versions.yml
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- name: gatk4 applybqsr test_gatk4_applybqsr_spark_intervals
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command: nextflow run tests/modules/gatk4/applybqsrspark -entry test_gatk4_applybqsr_spark_intervals -c tests/config/nextflow.config -c ./tests/modules/gatk4/applybqsrspark/nextflow.config
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tags:
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- gatk4
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- gatk4/applybqsrspark
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files:
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- path: output/gatk4/test.bam
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- path: output/gatk4/versions.yml
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- name: gatk4 applybqsr test_gatk4_applybqsr_spark_cram
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command: nextflow run tests/modules/gatk4/applybqsrspark -entry test_gatk4_applybqsr_spark_cram -c tests/config/nextflow.config -c ./tests/modules/gatk4/applybqsrspark/nextflow.config
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tags:
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- gatk4
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- gatk4/applybqsrspark
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files:
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- path: output/gatk4/test.cram
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md5sum: 60f7c822a9f2833e11eb7bfd16e4421f
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- path: output/gatk4/versions.yml
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