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18 lines
684 B
YAML
18 lines
684 B
YAML
- name: Run cutadapt single-end test workflow
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command: nextflow run ./tests/software/cutadapt -profile docker -entry test_cutadapt_se -c tests/config/nextflow.config
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tags:
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- cutadapt
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- cutadapt_se
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files:
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- path: ./output/cutadapt/test.cutadapt.log
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- path: ./output/cutadapt/test.trim.fastq.gz
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- name: Run cutadapt paired-end test workflow
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command: nextflow run ./tests/software/cutadapt -profile docker -entry test_cutadapt_pe -c tests/config/nextflow.config
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tags:
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- cutadapt
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- cutadapt_pe
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files:
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- path: ./output/cutadapt/test.cutadapt.log
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- path: ./output/cutadapt/test_1.trim.fastq.gz
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- path: ./output/cutadapt/test_2.trim.fastq.gz
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