nf-core_modules/tests/software/fastp/main.nf
2021-02-01 14:02:06 +01:00

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Text

#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { FASTP } from '../../../software/fastp/main.nf' addParams( options: [:] )
/*
* Test with single-end data
*/
workflow test_fastp_se {
def input = []
input = [ [ id:'test', single_end:true ], // meta map
[ file("${launchDir}/tests/data/fastq/rna/test_single_end.fastq.gz", checkIfExists: true) ] ]
FASTP( input )
}
/*
* Test with paired-end data
*/
workflow test_fastp_pe {
def input = []
input = [ [ id:'test', single_end:false ], // meta map
[ file("${launchDir}/tests/data/fastq/rna/test_R1.fastq.gz", checkIfExists: true),
file("${launchDir}/tests/data/fastq/rna/test_R2.fastq.gz", checkIfExists: true) ] ]
FASTP( input )
}