nf-core_modules/tests/modules/freebayes/test.yml
FriederikeHanssen f5d5926516
Update intervals (#1278)
* Match target bed to input files

* Intervals in getpileupsumamries

* more interval updates

* change targets in strelka

* remove leftover channel

* fix checksums

* add new test vcfs

* add new test vcfs

* Update modules/freebayes/main.nf

Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
2022-02-10 10:34:22 +01:00

49 lines
1.8 KiB
YAML

- name: freebayes test_freebayes
command: nextflow run tests/modules/freebayes -entry test_freebayes -c tests/config/nextflow.config
tags:
- freebayes
files:
- path: output/freebayes/test.vcf.gz
md5sum: f28d0b8e2ccedeac0e590ca2ecaac83d
- path: output/freebayes/versions.yml
md5sum: 53651eb835af65df829241257584a7d2
- name: freebayes test_freebayes_bed
command: nextflow run tests/modules/freebayes -entry test_freebayes_bed -c tests/config/nextflow.config
tags:
- freebayes
files:
- path: output/freebayes/test.vcf.gz
md5sum: 1927441d1b7a4c48cbb61821de300ad4
- path: output/freebayes/versions.yml
md5sum: becc93c8a0be580c09d55b955d60a5e1
- name: freebayes test_freebayes_cram
command: nextflow run tests/modules/freebayes -entry test_freebayes_cram -c tests/config/nextflow.config
tags:
- freebayes
files:
- path: output/freebayes/test.vcf.gz
md5sum: 9b8d1d51d779bbea4086c7f7a2ece641
- path: output/freebayes/versions.yml
md5sum: 2e5b266edfc6cab81353cfc72c00f67c
- name: freebayes test_freebayes_somatic
command: nextflow run tests/modules/freebayes -entry test_freebayes_somatic -c tests/config/nextflow.config
tags:
- freebayes
files:
- path: output/freebayes/test.vcf.gz
md5sum: dcaa639912174055c1380913d6102c01
- path: output/freebayes/versions.yml
md5sum: 8fbdb4c052fb3e42b5508a966125fa05
- name: freebayes test_freebayes_somatic_cram_intervals
command: nextflow run tests/modules/freebayes -entry test_freebayes_somatic_cram_intervals -c tests/config/nextflow.config
tags:
- freebayes
files:
- path: output/freebayes/test.vcf.gz
md5sum: b0052a2b83c0ba1b9686d0c96e61712f
- path: output/freebayes/versions.yml
md5sum: af97e3dfdc086188739907c3460e49e0