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374d81e0b3
* readcounter module for hmmcopy * Changed version number * Fix indentation * Update main.nf * Update modules/hmmcopy/readcounter/main.nf Co-authored-by: Chris Cheshire <chris.j.cheshire@gmail.com> Co-authored-by: Simon Pearce <simon.pearce@cruk.manchester.ac.uk> Co-authored-by: Chris Cheshire <chris.j.cheshire@gmail.com>
43 lines
1.2 KiB
YAML
43 lines
1.2 KiB
YAML
name: hmmcopy_readcounter
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description: readCounter function from HMMcopy utilities, used to generate read in windows
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keywords:
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- hmmcopy
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- readcounter
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- cnv
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tools:
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- hmmcopy:
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description: C++ based programs for analyzing BAM files and preparing read counts -- used with bioconductor-hmmcopy
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homepage: https://github.com/shahcompbio/hmmcopy_utils
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documentation: https://github.com/shahcompbio/hmmcopy_utils
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tool_dev_url: https://github.com/shahcompbio/hmmcopy_utils
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doi: ""
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licence: ['GPL v3']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bam:
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type: file
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description: BAM/CRAM/SAM file
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pattern: "*.{bam,cram,sam}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- wig:
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type: file
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description: A wig file with the number of reads lying within each window in each chromosome
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pattern: "*.wig"
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authors:
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- "@sppearce"
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