mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
6c45773c0b
* add module AMPlify * Apply suggestions from code review Thanks for the review! Co-authored-by: Moritz E. Beber <midnighter@posteo.net> * removed trailing whitespaces * Apply suggestions from code review Thanks again! Co-authored-by: Moritz E. Beber <midnighter@posteo.net> * Apply suggestions from code review Thank you for the suggestions! Co-authored-by: Sateesh Peri <33637490+sateeshperi@users.noreply.github.com> Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Apply suggestions from code review Co-authored-by: Sateesh Peri <33637490+sateeshperi@users.noreply.github.com> * including review suggestions * fix versions.yml * add model_dir input * add model_dir to meta.yml * complete faa pattern in meta.yml * add fa.gz to pattern Co-authored-by: Moritz E. Beber <midnighter@posteo.net> Co-authored-by: Sateesh Peri <33637490+sateeshperi@users.noreply.github.com> Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
47 lines
1.3 KiB
YAML
47 lines
1.3 KiB
YAML
name: "amplify_predict"
|
|
description: AMPlify is an attentive deep learning model for antimicrobial peptide prediction.
|
|
keywords:
|
|
- antimicrobial peptides
|
|
- AMPs
|
|
- prediction
|
|
- model
|
|
tools:
|
|
- "amplify":
|
|
description: "Attentive deep learning model for antimicrobial peptide prediction"
|
|
homepage: "https://github.com/bcgsc/AMPlify"
|
|
documentation: "https://github.com/bcgsc/AMPlify"
|
|
tool_dev_url: "https://github.com/bcgsc/AMPlify"
|
|
doi: "https://doi.org/10.1186/s12864-022-08310-4"
|
|
licence: "['GPL v3']"
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- faa:
|
|
type: file
|
|
description: amino acid sequences fasta
|
|
pattern: "*.{fa,fa.gz,faa,faa.gz,fasta,fasta.gz}"
|
|
- model_dir:
|
|
type: directory
|
|
description: Directory of where models are stored (optional)
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- tsv:
|
|
type: file
|
|
description: amino acid sequences with prediction (AMP, non-AMP) and probability scores
|
|
pattern: "*.{tsv}"
|
|
|
|
authors:
|
|
- "@louperelo"
|