mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 03:28:17 +00:00
36 lines
922 B
YAML
36 lines
922 B
YAML
name: picard_mergesamfiles
|
|
on:
|
|
push:
|
|
paths:
|
|
- software/picard/mergesamfiles/**
|
|
- .github/workflows/picard_mergesamfiles.yml
|
|
- tests/software/picard/**
|
|
pull_request:
|
|
paths:
|
|
- software/picard/mergesamfiles/**
|
|
- .github/workflows/picard_mergesamfiles.yml
|
|
- tests/software/picard/**
|
|
|
|
jobs:
|
|
ci_test:
|
|
runs-on: ubuntu-latest
|
|
env:
|
|
NXF_ANSI_LOG: false
|
|
steps:
|
|
- uses: actions/checkout@v2
|
|
|
|
- name: Install Nextflow
|
|
run: |
|
|
export NXF_VER="20.07.1"
|
|
wget -qO- get.nextflow.io | bash
|
|
sudo mv nextflow /usr/local/bin/
|
|
|
|
- name: Set up Python
|
|
uses: actions/setup-python@v2
|
|
with:
|
|
python-version: "3.x"
|
|
- name: Install dependencies
|
|
run: python -m pip install --upgrade pip pytest-workflow
|
|
|
|
# Test the module
|
|
- run: pytest --tag picard_mergesamfiles --symlink --wt 2
|