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3aacd46da2
* backfilled modules with meta.yml that had no license identifier * harmonized BSD license names * whitespace linting at modules/unzip/meta.yml:12 * harmonized software from US NIH-NCBI/NIST to 'US-Government-Work' * Update modules/bcftools/index/meta.yml `bcftools` is dual-licensed, use associative array to allow for multiple licenses Co-authored-by: Michael L Heuer <heuermh@acm.org> Co-authored-by: Michael L Heuer <heuermh@acm.org>
43 lines
1.4 KiB
YAML
43 lines
1.4 KiB
YAML
name: bedtools_complement
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description: Returns all intervals in a genome that are not covered by at least one interval in the input BED/GFF/VCF file.
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keywords:
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- bed
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- complement
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tools:
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- bedtools:
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description: |
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A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.
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documentation: https://bedtools.readthedocs.io/en/latest/content/tools/complement.html
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licence: ['MIT']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bed:
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type: file
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description: Input BED file
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pattern: "*.{bed}"
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- sizes:
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type: file
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description: File which defines the chromosome lengths for a given genome
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pattern: "*.{sizes}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bed:
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type: file
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description: Bed file with all genomic intervals that are not covered by at least one record from the input file.
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pattern: "*.{bed}"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@Emiller88"
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- "@sruthipsuresh"
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- "@drpatelh"
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