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nf-core_modules/tests/modules/gatk4
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FriederikeHanssen a9dd46f010
add gatk4/gatherbqsr (#1130) 
* nf-core modules create

* add module files

* indent

* remove templte code

* manually revert pytest changes from tools

* manually revert pytest changes from tools

* add include statement back in

Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
2021-12-08 23:43:36 +01:00
..
applybqsr Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
baserecalibrator Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
bedtointervallist Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
calculatecontamination Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
createsequencedictionary Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
createsomaticpanelofnormals Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110) 2021-12-02 12:39:55 +00:00
estimatelibrarycomplexity Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
fastqtosam Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
filtermutectcalls Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110) 2021-12-02 12:39:55 +00:00
gatherbqsrreports add gatk4/gatherbqsr (#1130) 2021-12-08 23:43:36 +01:00
genomicsdbimport Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
genotypegvcfs Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110) 2021-12-02 12:39:55 +00:00
getpileupsummaries Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
haplotypecaller Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
indexfeaturefile Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
intervallisttools Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
learnreadorientationmodel Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110) 2021-12-02 12:39:55 +00:00
markduplicates Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
mergebamalignment Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
mergevcfs Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
mutect2 Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
revertsam Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
samtofastq Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
splitncigarreads Update all modules to new NF DSL2 syntax (#1099) 2021-11-26 07:58:40 +00:00
variantfiltration Change syntax from task.ext.suffix to tast.ext.prefix in all modules (#1110) 2021-12-02 12:39:55 +00:00