nf-core_modules/software
2021-02-02 09:15:20 +01:00
..
bcftools bcftools_tabix generic for any TAB-delimited genome position file 2021-02-01 21:59:39 +01:00
bowtie Rename bowtie_index to bowtie_build 2021-02-01 17:53:31 +00:00
bowtie2 Update software/bowtie2/build/meta.yml 2021-01-30 13:21:56 +00:00
bwa style(#77): Fix editorconfig errors 2020-12-17 17:50:24 -06:00
cutadapt added cutadapt module and tests 2021-01-29 09:33:45 +01:00
deeptools style(#77): Fix editorconfig errors 2020-12-17 17:50:24 -06:00
dsh Update software/dsh/filterbed/main.nf 2021-01-29 18:14:13 +00:00
fastp added fastp module 2021-02-01 13:54:08 +01:00
fastqc style(#77): Fix editorconfig errors 2020-12-17 17:50:24 -06:00
gffread style(#77): Fix editorconfig errors 2020-12-17 17:50:24 -06:00
hisat2 style(#77): Fix editorconfig errors 2020-12-17 17:50:24 -06:00
homer/annotatepeaks style(#77): Fix editorconfig errors 2020-12-17 17:50:24 -06:00
lib style(#77): Fix editorconfig errors 2020-12-17 17:50:24 -06:00
macs2/callpeak style(#77): Fix editorconfig errors 2020-12-17 17:50:24 -06:00
multiqc Add --singularity_pull_docker_container to module yml 2020-12-14 00:34:24 +00:00
pangolin Update software/pangolin/main.nf 2021-01-29 11:43:42 +00:00
phantompeakqualtools style(#77): Fix editorconfig errors 2020-12-17 17:50:24 -06:00
picard style(#77): Fix editorconfig errors 2020-12-17 17:50:24 -06:00
preseq/lcextrap style(#77): Fix editorconfig errors 2020-12-17 17:50:24 -06:00
qualimap/rnaseq style(#77): Fix editorconfig errors 2020-12-17 17:50:24 -06:00
quast Update software/quast/meta.yml 2021-02-01 14:03:36 +01:00
rsem style(#77): Fix editorconfig errors 2020-12-17 17:50:24 -06:00
rseqc style(#77): Fix editorconfig errors 2020-12-17 17:50:24 -06:00
salmon Apply suggestions from code review 2021-01-29 12:40:15 +01:00
samtools Update software/samtools/mpileup/meta.yml 2021-01-29 18:12:17 +00:00
seacr/callpeak seacr | updated whitespace 2021-01-05 10:22:37 +00:00
SOFTWARE/TOOL style(#77): Fix editorconfig errors 2020-12-17 17:50:24 -06:00
sortmerna style(#77): Fix editorconfig errors 2020-12-17 17:50:24 -06:00
star added optional output files 2021-01-26 13:31:30 +01:00
stringtie style(#77): Fix editorconfig errors 2020-12-17 17:50:24 -06:00
subread/featurecounts style(#77): Fix editorconfig errors 2020-12-17 17:50:24 -06:00
trimgalore style(#77): Fix editorconfig errors 2020-12-17 17:50:24 -06:00
ucsc/bedgraphtobigwig style(#77): Fix editorconfig errors 2020-12-17 17:50:24 -06:00
umitools style(#77): Fix editorconfig errors 2020-12-17 17:50:24 -06:00