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04e82ec61a
* First version of the biobambam/bammarkduplicates2 module * Fixed the path of versions.yml * Regenerated the checksums as the previous files were generated with a single core * Added the `when:` block, as per #1261 Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
15 lines
421 B
Text
15 lines
421 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { BIOBAMBAM_BAMMARKDUPLICATES2 } from '../../../../modules/biobambam/bammarkduplicates2/main.nf'
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workflow test_biobambam_bammarkduplicates2 {
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input = [
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[ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_paired_end_bam'], checkIfExists: true)
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]
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BIOBAMBAM_BAMMARKDUPLICATES2 ( input )
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}
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