mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-10 20:23:10 +00:00
60c65fb386
* Add ultra/index and ultra/align modules * Correct tag and prefix * Fix typos * Remove SAMTOOLS SORT from test * Update: Convert sam to bam * Add tag to docker image * Fix typo * Add args2 for samtools
15 lines
483 B
Text
15 lines
483 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { ULTRA_INDEX } from '../../../../modules/ultra/index/main.nf'
|
|
include { GFFREAD } from '../../../../modules/gffread/main.nf'
|
|
|
|
workflow test_ultra_index {
|
|
|
|
genome = file(params.test_data['homo_sapiens']['genome']['genome_fasta'], checkIfExists: true)
|
|
gtf = file(params.test_data['homo_sapiens']['genome']['genome_gtf'] , checkIfExists: true)
|
|
GFFREAD ( gtf )
|
|
|
|
ULTRA_INDEX ( genome, GFFREAD.out.gtf )
|
|
}
|