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60 lines
2 KiB
YAML
60 lines
2 KiB
YAML
name: MultiQC
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description: Aggregate results from bioinformatics analyses across many samples into a single report
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keywords:
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- QC
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- bioinformatics tools
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- Beautiful stand-alone HTML report
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tools:
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- multiqc:
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description: |
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MultiQC searches a given directory for analysis logs and compiles a HTML report.
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It's a general use tool, perfect for summarising the output from numerous bioinformatics tools.
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homepage: https://multiqc.info/
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documentation: https://multiqc.info/docs/
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params:
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- outdir:
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type: string
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description: |
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The pipeline's output directory. By default, the module will
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output files into `$params.outdir/<SOFTWARE>`
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- publish_dir_mode:
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type: string
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description: |
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Value for the Nextflow `publishDir` mode parameter.
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Available: symlink, rellink, link, copy, copyNoFollow, move.
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- enable_conda:
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type: boolean
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description: |
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Run the module with Conda using the software specified
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via the `conda` directive
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- singularity_pull_docker_container:
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type: boolean
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description: |
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Instead of directly downloading Singularity images for use with Singularity,
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force the workflow to pull and convert Docker containers instead.
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input:
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- multiqc_files:
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type: file
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description: |
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List of reports / files recognised by MultiQC, for example the html and zip output of FastQC
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output:
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- report:
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type: file
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description: MultiQC report file
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pattern: "multiqc_report.html"
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- data:
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type: dir
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description: MultiQC data dir
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pattern: "multiqc_data"
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- plots:
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type: file
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description: Plots created by MultiQC
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pattern: "*_data"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@abhi18av"
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- "@bunop"
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- "@drpatelh"
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