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46 lines
1.2 KiB
YAML
46 lines
1.2 KiB
YAML
name: variantbam
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description: Filtering, downsampling and profiling alignments in BAM/CRAM formats
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keywords:
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- filter
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- bam
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- subsample
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- downsample
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- downsample bam
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- subsample bam
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tools:
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- variantbam:
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description: Filtering and profiling of next-generational sequencing data using region-specific rules
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homepage: https://github.com/walaj/VariantBam
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documentation: https://github.com/walaj/VariantBam#table-of-contents
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tool_dev_url: https://github.com/walaj/VariantBam
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doi: 10.1093/bioinformatics/btw111
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licence: ['Apache2']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- bam:
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type: file
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description: BAM/CRAM file
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pattern: "*.{bam,cram}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- bam:
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type: file
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description: Filtered or downsampled BAM file
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pattern: "*.{bam}"
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authors:
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- "@bjohnnyd"
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