mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-13 05:13:09 +00:00
3aacd46da2
* backfilled modules with meta.yml that had no license identifier * harmonized BSD license names * whitespace linting at modules/unzip/meta.yml:12 * harmonized software from US NIH-NCBI/NIST to 'US-Government-Work' * Update modules/bcftools/index/meta.yml `bcftools` is dual-licensed, use associative array to allow for multiple licenses Co-authored-by: Michael L Heuer <heuermh@acm.org> Co-authored-by: Michael L Heuer <heuermh@acm.org>
58 lines
1.5 KiB
YAML
58 lines
1.5 KiB
YAML
name: methyldackel_extract
|
|
description: Extracts per-base methylation metrics from alignments
|
|
keywords:
|
|
- methylation
|
|
- 5mC
|
|
- methylseq
|
|
- bisulphite
|
|
- consensus
|
|
- bedGraph
|
|
- bam
|
|
- cram
|
|
tools:
|
|
- methyldackel:
|
|
description: |
|
|
A (mostly) universal methylation extractor
|
|
for BS-seq experiments.
|
|
homepage: https://github.com/brentp/bwa-meth
|
|
documentation: https://github.com/brentp/bwa-meth
|
|
arxiv: arXiv:1401.1129
|
|
licence: ['MIT']
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- fasta:
|
|
type: file
|
|
description: Input genome fasta file
|
|
pattern: "*.{fasta,fa}"
|
|
- fai:
|
|
type: file
|
|
description: FASTA index file
|
|
pattern: "*.{fai}"
|
|
- bam:
|
|
type: file
|
|
description: BAM/CRAM file
|
|
pattern: "*.{bam,cram}"
|
|
- bai:
|
|
type: file
|
|
description: BAM/CRAM index file
|
|
pattern: "*.{bai,crai}"
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- bedgraph:
|
|
type: file
|
|
description: bedGraph file containing per-base methylation metrics
|
|
pattern: "*.{bedGraph}"
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
authors:
|
|
- "@phue"
|