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3ac21ff0dc
* Add abacas module * Add test for abacas module * Add Harshil to authorship * Updating test with the data uploaded to nf-core/datasets * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
48 lines
1.3 KiB
YAML
48 lines
1.3 KiB
YAML
name: abacas
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description: contiguate draft genome assembly
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keywords:
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- genome
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- assembly
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- contiguate
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tools:
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- abacas:
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description: ABACAS is intended to rapidly contiguate (align, order, orientate), visualize and design primers to close gaps on shotgun assembled contigs based on a reference sequence.
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homepage: http://abacas.sourceforge.net/documentation.html
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documentation: http://abacas.sourceforge.net/documentation.html
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tool_dev_url: None
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doi: "10.1093/bioinformatics/btp347"
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licence: ['GPL v2-or-later']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- scaffold:
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type: file
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description: Fasta file containing scaffold
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pattern: "*.{fasta,fa}"
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- fasta:
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type: file
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description: FASTA reference file
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pattern: "*.{fasta,fa}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- results:
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type: file
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description: Sorted BAM/CRAM/SAM file
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pattern: "*.{bam,cram,sam}"
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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authors:
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- "@joseespinosa"
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- "@drpatelh"
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