nf-core_modules/software/plasmidid/meta.yml
Jose Espinosa-Carrasco f90dde0d88
Add plasmidid module (#410)
* Adding plasmidid module

* Adding test for plasmidid module

* Update plasmidid version to 1.6.4

* Adding contigs.fasta file

* Update tests

* Adding output files on test.yml
2021-04-08 22:44:30 +01:00

76 lines
2 KiB
YAML

name: plasmidid
description: assembles bacterial plasmids
keywords:
- assembly
- plasmid
- bacterial
tools:
- plasmidid:
description: Pipeline for plasmid identification and reconstruction
homepage: https://github.com/BU-ISCIII/plasmidID/wiki
documentation: https://github.com/BU-ISCIII/plasmidID#readme
tool_dev_url: https://github.com/BU-ISCIII/plasmidID
doi: ""
licence: ['GPL v3']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- scaffold:
type: file
description: |
Fasta file containing scaffold
- fasta:
type: file
description: FASTA reference file
pattern: "*.{fasta,fa}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- html:
type: file
description: html file with results rendered
pattern: "*.{html}"
- tab:
type: file
description: Results in a tabular file
pattern: "*.{tab}"
- images:
type: directory
description: Directory containing the images produced by plasmidid
pattern: "images"
- logs:
type: directory
description: Directory containing the logs produced by plasmidid
pattern: "logs"
- data:
type: directory
description: Directory containing the data produced by plasmidid
pattern: "data"
- database:
type: directory
description: Directory containing the database produced by plasmidid
pattern: "database"
- fasta_files:
type: directory
description: Directory containing the fasta files produced by plasmidid
pattern: "fasta_files"
- kmer:
type: directory
description: Directory containing the kmer files produced by plasmidid
pattern: "database"
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
authors:
- "@joseespinosa"
- "@drpatelh"