mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-13 05:13:09 +00:00
3ac21ff0dc
* Add abacas module * Add test for abacas module * Add Harshil to authorship * Updating test with the data uploaded to nf-core/datasets * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
16 lines
481 B
Text
16 lines
481 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { ABACAS } from '../../../software/abacas/main.nf' addParams ( options: ['args' : '-m -p nucmer'] )
|
|
|
|
workflow test_abacas {
|
|
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
|
file(params.test_data['sarscov2']['genome']['scaffolds_fasta'], checkIfExists: true)
|
|
]
|
|
|
|
fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
|
|
|
|
ABACAS ( input, fasta )
|
|
}
|