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nf-core_modules/tests/modules/deepvariant/nextflow.config
FriederikeHanssen 1287ba48fe
Update version & add intervals usage ()
* Update version & add intervals usage

* Fix config when passing intervals as file

* Use proper paths
2022-01-17 16:40:31 +01:00

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process {
publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
withName: DEEPVARIANT {
ext.args = ' --regions=\"chr22:0-40001\" --model_type=WGS '
ext.prefix = { "${meta.id}_out" }
}
withName: DEEPVARIANT_INTERVALS {
ext.args = '--model_type=WGS '
ext.prefix = { "${meta.id}_out" }
}
}