mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
be798861c6
* add module for abricate * rename abricate/abricate to abricate/run * Update test.yml Co-authored-by: Sateesh <33637490+sateeshperi@users.noreply.github.com>
15 lines
365 B
Text
15 lines
365 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { ABRICATE_RUN } from '../../../../modules/abricate/run/main.nf'
|
|
|
|
workflow test_abricate_run {
|
|
|
|
input = [
|
|
[ id:'test', single_end:false ], // meta map
|
|
file(params.test_data['bacteroides_fragilis']['genome']['genome_fna_gz'], checkIfExists: true)
|
|
]
|
|
|
|
ABRICATE_RUN ( input )
|
|
}
|