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906577873b
* New functions.nf * Convert code to create versions.yml * Update meta.yml * update output channel * Fix more meta.yml * Manually update remaining modules * remove superflous echo * Fix misformatted meta.yml files * Fix yaml, was list instead of dict * fix version for bcftools Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
36 lines
1 KiB
YAML
36 lines
1 KiB
YAML
name: bismark_genomepreparation
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description: |
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Converts a specified reference genome into two different bisulfite
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converted versions and indexes them for alignments.
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keywords:
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- bismark
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- 3-letter genome
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- index
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- methylation
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- 5mC
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- methylseq
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- bisulphite
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- fasta
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tools:
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- bismark:
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description: |
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Bismark is a tool to map bisulfite treated sequencing reads
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and perform methylation calling in a quick and easy-to-use fashion.
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homepage: https://github.com/FelixKrueger/Bismark
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documentation: https://github.com/FelixKrueger/Bismark/tree/master/Docs
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doi: 10.1093/bioinformatics/btr167
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input:
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- fasta:
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type: file
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description: Input genome fasta file
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output:
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- index:
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type: dir
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description: Bismark genome index directory
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pattern: "BismarkIndex"
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- version:
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type: file
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description: File containing software version
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pattern: "versions.yml"
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authors:
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- "@phue"
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