mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-22 00:02:04 +00:00
e937c7950a
* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
15 lines
563 B
Text
15 lines
563 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { IVAR_TRIM } from '../../../../modules/ivar/trim/main.nf' addParams([:])
|
|
|
|
workflow test_ivar_trim {
|
|
input = [ [ id:'test'],
|
|
file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true),
|
|
file(params.test_data['sarscov2']['illumina']['test_paired_end_sorted_bam_bai'], checkIfExists: true)
|
|
]
|
|
bed_file = file(params.test_data['sarscov2']['genome']['test_bed'], checkIfExists: true)
|
|
|
|
IVAR_TRIM ( input, bed_file )
|
|
}
|